PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG394000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 258aa    MW: 27507.3 Da    PI: 7.2006
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG394000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.3e-13105151354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h e+Er+RRd++N  f  Lr  +P+       +++Ka+ L  A  YI +L
  Pavir.6KG394000.1.p 105 VTHVEAERQRRDKLNRLFCDLRATVPTV-----SRMDKASLLADAAAYIAQL 151
                          68*************************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-15101166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.792102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10105151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-10105152No hitNo description
Gene3DG3DSA:4.10.280.105.9E-15106164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDVLELELVR PASTTCSSPS PASIFSTAGH HHQEPGFVSS EALERWLGMD DSMLDDGPLL  60
EDGGDEASQA PGNEERLSGR LPAAPPAPKR RGRKPGPRSK GTAAVTHVEA ERQRRDKLNR  120
LFCDLRATVP TVSRMDKASL LADAAAYIAQ LRGRVAQLEA ENKLAAAAAA AAPVQENLEV  180
RMVGSEAAEL RLTTAARHAP ARFMLALRWL DLPVQHASVC LVGGMTVQSA VVDVPAAVLR  240
DERALRAALL HRLQQTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-17105161763Transcription factor MYC2
5gnj_B1e-17105161763Transcription factor MYC2
5gnj_E1e-17105161763Transcription factor MYC2
5gnj_F1e-17105161763Transcription factor MYC2
5gnj_G1e-17105161763Transcription factor MYC2
5gnj_I1e-17105161763Transcription factor MYC2
5gnj_M1e-17105161763Transcription factor MYC2
5gnj_N1e-17105161763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG394000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822542.15e-93transcription factor MYC3-like
TrEMBLA0A3L6RK902e-98A0A3L6RK90_PANMI; Transcription factor MYC2-like
STRINGPavir.Fa00118.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.13e-16bHLH family protein