PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG394600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 250aa MW: 26419.7 Da PI: 5.9661

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG394600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.5e-09	96	123	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 4 ahnerErrRRdriNsafeeLrellPk.a 30 +h e+Er+RRd++N f eLr +Pk + Pavir.6KG394600.1.p 96 SHVEAERQRRDKLNRLFCELRAAVPKvS 123 799**********************944 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.502	92	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-12	93	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-10	96	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	96	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.69E-9	96	140	No hit	No description
SMART	SM00353	1.5E-6	98	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDELVSSSSS LSTAPFSTRG HLPQDLELEF LCCNGLDQWM VSDEPLDLDG ATWGDDASGG 60 SASAGNNDLS GEPPPAAPKR RRGRKPGPRT NGPPISHVEA ERQRRDKLNR LFCELRAAVP 120 KVSLLADAAT YIAELRDRVE QLEAEAKQAA AATAVADTPA FGSGGGLEEK LEVRVVARDA 180 AALRLTSAAR HAPARLMNTL RSLDLPVQHA CVTRLGGVTV HDAVVDVPAG LQDESGLRAA 240 LVHKLQRSV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG394600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974088.1	1e-105	transcription factor bHLH14
TrEMBL	A0A3L6PP84	1e-106	A0A3L6PP84_PANMI; Transcription factor bHLH14-like
STRING	Si015343m	1e-101	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP893	33	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	2e-16	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.6KG394600.1.p