PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG394700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 466aa    MW: 49853.7 Da    PI: 6.971
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG394700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.59e-11326384563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr +r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l +l+  +a l +++
  Pavir.6KG394700.1.p 326 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSAGLATQN 384
                          899*********************************************99998887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-18322386IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.852324387IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-12326377No hitNo description
PfamPF001701.6E-9326384IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.1E-12326383No hitNo description
CDDcd147031.34E-23327378No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDDPGATDPA AARHHLSPQL GGQPPVPRSP TPLDLAAAAA SGYRRLSPSL RPPAHPQARL  60
PSPYGQIPAP GGGGHHARSL SQPLFFSLDS LPPPPYADLG AAPHAVPPSP PSSSSDPQQQ  120
PPPPPPLGLP PRKGAHRRSH SDIPFGGFAQ LSPPLPPPAP VKREVTVAAE GCRSDGGDDA  180
ALYDLVNSYM DLDGLDPLNS SEDRHDDRDS HASGTRAGSA ADSSENEAES QSTSVDRKDG  240
GKSRHCRSLS MDSFMGKLNF AAGDESPKLP LPSPGGGLTR SGSGSLEGGA VALFDMEFAN  300
GEFTESEKKK IMANERLAEI ALTDPKRVKR ILANRQSAAR SKERKMRYIQ ELEHKVQVLQ  360
TEATTLSAQL TMLQRDSAGL ATQNNELKIR LQAMEQQAQL RDALNEALTA EVQRLKLATG  420
EITDGRMAKS LQQQMNSQML QLQQLQIQQQ QQGQQQQQQQ PQKLA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.363130.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG394700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0696230.0BT069623.1 Zea mays full-length cDNA clone ZM_BFb0192H19 mRNA, complete cds.
GenBankKJ7277390.0KJ727739.1 Zea mays clone pUT5680 bZIP transcription factor (bZIP43) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822599.10.0transcription factor RF2a-like
TrEMBLA0A2T7DAC50.0A0A2T7DAC5_9POAL; Uncharacterized protein
STRINGPavir.Fa00090.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62473650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.32e-74bZIP family protein