PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG397800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 415aa    MW: 43304.8 Da    PI: 5.3054
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG397800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43.1e-35391312103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k
  Pavir.6KG397800.1.p  39 FLSKTYQLVDDPAVDDVISWNDDGSAFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEK 119
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k +
  Pavir.6KG397800.1.p 120 RLLCDIHRRKVT 131
                          *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.1E-3829123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5935128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.71E-3536128IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-203962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3139128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MAAEQVAAAT GGEPPPATPQ PAEGVTAAAA GQRSVPTPFL SKTYQLVDDP AVDDVISWND  60
DGSAFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA NDCFRRGEKR  120
LLCDIHRRKV TQAAGATVTV AAAAVPMALP VGSPVYSGDE QVLSSSSSPE PPPQAASGSG  180
SGGEASGGDA GEENDRLRRE NARLARELGQ MKKLCNNILL LMSKYAATQQ LDAAAQQLDA  240
AKATAAAAGN CSGESSEAAA TPPPLPSVLE LLPSCRAGPA PAAAEEPPEA AAGTARGDDD  300
DDNKAGARLF GVSIGRKRAR DHASNGDAGG AEDPVSRGAA AAAEVKAEPV DAQAEHRLQH  360
QQLPQLRDDH HGATEPQAWP IYRPRPVYHP LRACNGSEGS AGTGGDHDGS NSTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-263013412125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG397800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650330.0EU965033.1 Zea mays clone 283366 heat shock factor protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822703.10.0heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-144HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A2T7DAF70.0A0A2T7DAF7_9POAL; Uncharacterized protein
STRINGPavir.Fb02392.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.16e-58HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]