PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG401200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 257aa    MW: 28457.7 Da    PI: 8.5594
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG401200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Pavir.6KG401200.1.p 14 KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding57.62.9e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T++Ed+l+v+++ +lG++ W++Ia++++ gRt++++k++w+++
  Pavir.6KG401200.1.p  67 RGNFTADEDDLIVKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.558961IPR017930Myb domain
SMARTSM007173.2E-131363IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-2913108IPR009057Homeodomain-like
PfamPF002495.3E-151461IPR001005SANT/Myb domain
CDDcd001671.56E-101661No hitNo description
PROSITE profilePS5129428.15962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2765116IPR009057Homeodomain-like
SMARTSM007173.3E-1766114IPR001005SANT/Myb domain
PfamPF002491.6E-1667111IPR001005SANT/Myb domain
CDDcd001671.24E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TADEDDLIVK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLLSRG  120
IDPVTHRPIA DAARNVTISF QPDAPSQQQL SDEAEAPPPP PPQQQQQLKP PPRCPDLNLD  180
LCISPPCHKE EEDQELVKPA AVKREMLQAG HGTLGLCFGC SLGLQKGAAG CTCSSNSHFL  240
GLRVGMLLDF RGLEMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG401200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2991880.0JF299188.1 Panicum virgatum R2R3-MYB transcriptional factor PvMYB4d mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822035.11e-155myb-related protein Zm38-like
SwissprotP200251e-126MYB38_MAIZE; Myb-related protein Zm38
TrEMBLG0ZKW00.0G0ZKW0_PANVG; R2R3-MYB transcriptional factor PvMYB4d
STRINGPavir.J16675.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-94myb domain protein 4
Publications ? help Back to Top
  1. Shen H, et al.
    Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks.
    New Phytol., 2012. 193(1): p. 121-36
    [PMID:21988539]
  2. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]