PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG401600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 145aa    MW: 15497.6 Da    PI: 10.2101
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG401600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1422e-1365117557
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                          +r  rk+kNRe+A rsR+R+ a++ eLe++v  L ae ++L+k  +elk+ +a
  Pavir.6KG401600.1.p  65 RRRERKMKNRESAARSRLRRMAYVSELEKEVSLLRAEKEELAKLCQELKEAAA 117
                          7889**********************************999999999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.1E-961125IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.57663114IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.1E-1264115No hitNo description
SuperFamilySSF579592.48E-1065114No hitNo description
PfamPF001704.0E-1165115IPR004827Basic-leucine zipper domain
PROSITE patternPS0003606983IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEPQQGGEQL AWGPTGAGAA CLCPAAVASS AAGNVFPRQV LEQEMLRRAE QQLQLQVGGG  60
GGGDRRRERK MKNRESAARS RLRRMAYVSE LEKEVSLLRA EKEELAKLCQ ELKEAAADEA  120
PASAPGKRAA AAPRRLQRTA SAPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG401600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820333.12e-37protein FD-like isoform X2
TrEMBLA0A3L6RG533e-36A0A3L6RG53_PANMI; Uncharacterized protein
STRINGPavir.Fa00021.1.p3e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151931719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.22e-07basic region/leucine zipper motif 27