PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG413300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 661aa    MW: 71982 Da    PI: 4.3558
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG413300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.98e-53251531129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+yk+ePwdLp+  ++++++++wyfFs+ d+k+a+  r+nrat+ gyWk+tgk
  Pavir.6KG413300.1.p  25 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKLEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATSGGYWKTTGK 113
                          579***************************.99***************4357888999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          d+ev + + + vg+kktLvf+ grapkge+t+Wvmheyrle
  Pavir.6KG413300.1.p 114 DREVRH-GPRIVGMKKTLVFHAGRAPKGERTNWVMHEYRLE 153
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-6120173IPR003441NAC domain
PROSITE profilePS5100559.40525173IPR003441NAC domain
PfamPF023652.1E-2827152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MTRPSSSSSS APPPPAAAEA EATSLAPGFR FHPTDEELVS YYLKRKVLGR PLKVDAIAEV  60
DLYKLEPWDL PARSRLRSRD SQWYFFSRLD RKHANRARTN RATSGGYWKT TGKDREVRHG  120
PRIVGMKKTL VFHAGRAPKG ERTNWVMHEY RLEGEEAAGI PQDSFVVCRI FQKAGPGPQN  180
GAQYGAPFVE EEWEEDDEDV GLLPVEGDAV VDHEIPPGPK EIPGALEKGY LQMSDLIQGL  240
GDQNGNGTIG LPVSDTSNNS NHSEDIDGNS GDILSDPNLG SNFLQYVEPG EQNSLMLNEN  300
MISNANDGDF LNNFSPSDGF LELKDFADAA NLDYHVRNES TVWPSDGWAW KTPDSLETVN  360
GANNDIPPLP DDQIFQPDEL EQLLQSIQED SHFGSSVIDP PHSSITNSVM PEDDSLMFYD  420
APFDSTMCDD GFRQVNGILN SPATNLSGIG MVDDGMPYYD AMDDNLFNDI LGNIQESAGS  480
SHAFNSPVLT QEVNNTMYTY SPTQKVLEPN FVVGAPSSAR LPEAGSQLNC VVLPDGQAKS  540
SSIGKRILDS ISAPPAFASE FPAHLRKSLA PISGSRSNTF HVSAEVISIG SLAVASGPDK  600
WSLQKNQGME LLITDFEPGT RIHCGCSAIT TVLRGGFCLV FFSAIMLLVS YEVGMCIYGK  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-48181739168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.33680.0callus| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG413300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639170.0BT063917.1 Zea mays full-length cDNA clone ZM_BFc0120A04 mRNA, complete cds.
GenBankKJ7280190.0KJ728019.1 Zea mays clone pUT6155 NAC transcription factor (NAC12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820240.10.0NAC domain-containing protein 53-like
TrEMBLA0A2S3I4R10.0A0A2S3I4R1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DAU20.0A0A2T7DAU2_9POAL; Uncharacterized protein
STRINGPavir.Fa00048.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.18e-82NAC domain containing protein 2