PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG022800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 211aa MW: 24398.4 Da PI: 9.7371

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG022800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.4	1.1e-18	1	81	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+Y +vGFs+rks kk+ ++g+i +++ vCs +g+r++++++ +++trtg +a+++ + +++g+w v+k++l+HnH la Pavir.6NG022800.1.p 1 MYNTYVVKVGFSIRKSDIKKR-EDGTISNKHIVCSSQGYRKNKSSS-------KSTTRTGWNARVQFSVSREGVWTVQKVVLDHNHYLA 81 6*************98876.9999**********998777.......899****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-15	1	81	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MYNTYVVKVG FSIRKSDIKK REDGTISNKH IVCSSQGYRK NKSSSKSTTR TGWNARVQFS 60 VSREGVWTVQ KVVLDHNHYL ASPNKRQKLR SQRSVEEADR KLIGQMREGG MKPSQVFEFM 120 VQFYSGADKV PFSQIDCNNE IGRQRKKYLE SNDAQTLLEY LENKQIDDPS FFYAIQIDQE 180 DGRMANFFWA DGQSIMDYAS FDTTFQTNKF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG022800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971460.1	1e-118	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_012703729.1	1e-115	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q10HU3	1e-102	Q10HU3_ORYSJ; Os03g0576100 protein
TrEMBL	T1MNQ5	1e-104	T1MNQ5_TRIUA; Uncharacterized protein
STRING	Sb06g016820.1	1e-113	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-35	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.6NG022800.1.p