PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG052300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 254aa    MW: 27071.8 Da    PI: 6.6286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG052300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-13102147454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RRd++N  f eLr  +P+       +++Ka+ L  A  YI +L
  Pavir.6NG052300.1.p 102 THVEAERQRRDKLNRLFCELRAAVPTV-----SRMDKASLLADAAAYIAQL 147
                          899***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1695161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.64698147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.20E-11102148No hitNo description
PfamPF000101.2E-10102147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-15102159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDELELACPA STTSSSPSAA SFFSAAGHHH QEPGFVSAEV LERWLGMDDC MLDDGPLLQD  60
GGDEASRAQG IEEQLSGRPP APPAPKRRGR KPGPRSKGTA ITHVEAERQR RDKLNRLFCE  120
LRAAVPTVSR MDKASLLADA AAYIAQLRGR VDQLEAENKL AVAAAAAAPV QENLEVRMVG  180
SEAAALRLTT AARHAPARFM LVLRWLDLPV QHASVCLVGG MTVQDAVVDV PAAALRDERA  240
LRAALLHLLQ QTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-17101157763Transcription factor MYC2
5gnj_B4e-17101157763Transcription factor MYC2
5gnj_E4e-17101157763Transcription factor MYC2
5gnj_F4e-17101157763Transcription factor MYC2
5gnj_G4e-17101157763Transcription factor MYC2
5gnj_I4e-17101157763Transcription factor MYC2
5gnj_M4e-17101157763Transcription factor MYC2
5gnj_N4e-17101157763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG052300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822542.11e-96transcription factor MYC3-like
TrEMBLA0A3L6RK901e-99A0A3L6RK90_PANMI; Transcription factor MYC2-like
STRINGPavir.Fb00905.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.19e-11bHLH family protein