PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG053500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 132aa    MW: 14825.5 Da    PI: 5.0965
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG053500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM331.8e-10711510127
                  NAM  10 tdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvka..eek.ew.yfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                          td elv+  L+++ +g +  + + + +++v i++++P+ L +++++  +++  + yfFs + + y+             Wk    ++++l
  Pavir.6NG053500.1.p   7 TDVELVD-ALARRRRGLPpPPSQPFtVHDVFIFDHDPSYLYTTYAGgaGSSgGCvYFFSDQFT-YQ-----------DGWKVAAGTQRIL 83 
                          7999995.57777777774333333599999*********74222222222444488876543.43...........23**9999999*9 PP

                  NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                          +++g++vg k+tLvf++gr     +t+W m+e+ 
  Pavir.6NG053500.1.p  84 DAGGAVVGSKDTLVFHEGRWLP--RTRWAMDEFD 115
                          99**************999877..9*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.721131IPR003441NAC domain
SuperFamilySSF1019415.36E-147121IPR003441NAC domain
PfamPF023653.6E-67115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MQQQPVTDVE LVDALARRRR GLPPPPSQPF TVHDVFIFDH DPSYLYTTYA GGAGSSGGCV  60
YFFSDQFTYQ DGWKVAAGTQ RILDAGGAVV GSKDTLVFHE GRWLPRTRWA MDEFDAMYQE  120
GFKYSYNDLR L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG053500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683066.12e-55uncharacterized protein LOC111257559
TrEMBLA0A368RIM45e-54A0A368RIM4_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3217433