PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG060700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 238aa    MW: 25687.4 Da    PI: 4.9501
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG060700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B386.52.3e-2754140187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          f+kvltpsdv+k++rlv+pk++ae++      +++l +ed+ g  W+++++y+++s++yv+tkGW++Fv+a +L +gD+v F++   
  Pavir.6NG060700.1.p  54 FDKVLTPSDVGKLNRLVVPKQHAERFFPAAGAGTQLCFEDRGGVPWRFRYSYWGSSQSYVMTKGWSRFVRAARLAAGDTVSFSRAAA 140
                          89************************555567789***********************************************96554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-3647154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-2852147IPR015300DNA-binding pseudobarrel domain
CDDcd100175.28E-2552137No hitNo description
PROSITE profilePS5086313.57854153IPR003340B3 DNA binding domain
PfamPF023621.6E-2454141IPR003340B3 DNA binding domain
SMARTSM010194.1E-1854150IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MYMDLSLGTT VEDTQEVQEE EQEDDLYQQQ VLIGQDLQHG GGEPSHVMAR EHMFDKVLTP  60
SDVGKLNRLV VPKQHAERFF PAAGAGTQLC FEDRGGVPWR FRYSYWGSSQ SYVMTKGWSR  120
FVRAARLAAG DTVSFSRAAA AAGRYFIDYR HCQHRSRDIS FGDAAAAPAW PMAVGVQRTA  180
AWGKGATMAV PAGDGVEAGP TGGARSFRLF GFNVECSGDD AAAASASAEV EYVDGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-44501514112B3 domain-containing transcription factor NGA1
5os9_B1e-44501514112B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG060700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284101e-123KJ728410.1 Zea mays clone pUT6715 ABI3VP1 transcription factor (ABI23) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822547.11e-136putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD58e-73Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A2S3I0H61e-135A0A2S3I0H6_9POAL; Uncharacterized protein
STRINGPavir.Fb00403.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.19e-47B3 family protein