PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG073200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 365aa    MW: 38417.4 Da    PI: 7.5178
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG073200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-08102127127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC+ f++ GtC+y  +C+FaHg+
  Pavir.6NG073200.1.p 102 FKTKLCCKFRA-GTCPYITNCNFAHGM 127
                          69*********.*************95 PP
2zf-CCCH18.14.6e-06180205126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          yk + C+ f+    C+yGd C+F H+
  Pavir.6NG073200.1.p 180 YKGRHCKKFYTEEGCPYGDACTFLHD 205
                          78888********************7 PP
3zf-CCCH43.45.8e-14243268126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  tG+C++G++C+FaHg
  Pavir.6NG073200.1.p 243 WKTRICNKWEMTGYCPFGSKCHFAHG 268
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.79E-899132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-14100134IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016101127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.737101128IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5102127IPR000571Zinc finger, CCCH-type
SMARTSM003560.3179206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8179207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629179207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7179207IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-17238272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-10239273IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9242269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422242270IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11243268IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWA NAAPSAGGDS AIWATEDDYR QWSNDPSYSD RNPSSRAGSE  60
QPPPGKKSRG GAGAGGGGGG GGGDGGGSIS TSKSRAIGKV FFKTKLCCKF RAGTCPYITN  120
CNFAHGMEEL RKPPPNWQEI VAVHEEATEQ REEHQIPIMT SGSVVVGDGG GSGSQGGRAY  180
KGRHCKKFYT EEGCPYGDAC TFLHDEQSKA RESMAISLSP TVGSGGYNAT SATGGMVPKP  240
SNWKTRICNK WEMTGYCPFG SKCHFAHGAA ELHKYGGGLV DIDSRDAAST PDSKQAGASA  300
KAPADSAAAS TAMPPHADVY HLGIQSQRST IVSQRSGHVQ RPIQKWKGPD KISRIYGDWI  360
DENE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.6870.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG073200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822166.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3L6PQV50.0A0A3L6PQV5_PANMI; Uncharacterized protein
STRINGPavir.Fb00411.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-104C3H family protein