PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG078400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 484aa MW: 52879.4 Da PI: 10.8515

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG078400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.2	5.6e-11	71	109	3	41
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 ++k +rr+++NReAAr+sR+RKka+i++Le+ +L + Pavir.6NG078400.1.p 71 RDKIQRRLAQNREAARKSRLRKKAYIQNLETSRMKLAQL 109 7899**************************865555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.7E-8	69	112	No hit	No description
Pfam	PF00170	2.9E-8	71	111	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.956	71	113	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.25E-6	73	114	No hit	No description
PROSITE pattern	PS00036	0	76	91	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-25	200	274	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MAAAGVWGDP FRPDGDALAA AAPVTAAAAP VDVDVEAEVK FGTRLAQDDV VPVEEAPPSS 60 DSFGHGDARP RDKIQRRLAQ NREAARKSRL RKKAYIQNLE TSRMKLAQLE QELIMARRQQ 120 VRPPRAPSDS GEQAKRTDRQ WSKDSGEMAR PRLPLLMSSD PPLQGAHAAG GVLAPPVVDP 180 RVSAFEMEYA RWVEDQEKQA AELLAALQPG APEFQLRFLV DAALAHYGAL FEARARAARA 240 DAFFVLSGVW RAPAERFFLW IGGFRPSELL KVLAPRLDPL AEQQASAVRA LQNTARQLED 300 ALSQGMSKLQ QTLVEALMTV DAPDEFMKTT KVLKALQQTT RACHGGSEPP AQKCRTPRLT 360 FSPLPRKEHV LHPTSRPVWT EAMTPPPPPR VHPTLRVSPS TTLTRLATTN PPPHAAVAVP 420 SGSLENLPIG PFPFPGGRGD RRGDRPRRPL RLADGASLRS APHPPLPPRH APARRRGYFP 480 STR*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MAAAGVWGDP FRPDGDALAA AAPVTAAAAP VDVDVEAEVK FGTRLAQDDV VPVEEAPPSS  60
DSFGHGDARP RDKIQRRLAQ NREAARKSRL RKKAYIQNLE TSRMKLAQLE QELIMARRQQ  120
VRPPRAPSDS GEQAKRTDRQ WSKDSGEMAR PRLPLLMSSD PPLQGAHAAG GVLAPPVVDP  180
RVSAFEMEYA RWVEDQEKQA AELLAALQPG APEFQLRFLV DAALAHYGAL FEARARAARA  240
DAFFVLSGVW RAPAERFFLW IGGFRPSELL KVLAPRLDPL AEQQASAVRA LQNTARQLED  300
ALSQGMSKLQ QTLVEALMTV DAPDEFMKTT KVLKALQQTT RACHGGSEPP AQKCRTPRLT  360
FSPLPRKEHV LHPTSRPVWT EAMTPPPPPR VHPTLRVSPS TTLTRLATTN PPPHAAVAVP  420
SGSLENLPIG PFPFPGGRGD RRGDRPRRPL RLADGASLRS APHPPLPPRH APARRRGYFP  480
STR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG078400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034698	1e-122	BT034698.1 Zea mays full-length cDNA clone ZM_BFb0012B03 mRNA, complete cds.
GenBank	BT038664	1e-122	BT038664.1 Zea mays full-length cDNA clone ZM_BFb0304N24 mRNA, complete cds.
GenBank	EU956720	1e-122	EU956720.1 Zea mays clone 1571658 transcription factor TGA4 mRNA, complete cds.
GenBank	KJ727561	1e-122	KJ727561.1 Zea mays clone pUT5421 bZIP transcription factor (bZIP107) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820316.1	1e-157	transcription factor TGA2.3-like isoform X2
Swissprot	Q6ZBS8	4e-82	TGL10_ORYSJ; Transcription factor TGAL10
TrEMBL	A0A2S3I0M0	1e-156	A0A2S3I0M0_9POAL; Uncharacterized protein
TrEMBL	A0A2T7D490	1e-156	A0A2T7D490_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PQP3	1e-155	A0A3L6PQP3_PANMI; Transcription factor HBP-1b(C38)-like isoform X1
STRING	Pavir.Fb00495.1.p	1e-164	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	5e-53	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Pavir.6NG078400.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]