PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG101100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 563aa MW: 65382.4 Da PI: 7.5207

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG101100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86	5.6e-27	34	121	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++ GFs+r+s+s++ k++++i++rtf+Cs+eg ++++k++ e+++ +r+etr+ C+a++k++++ dg ++++++e eHnH la Pavir.6NG101100.1.p 34 QFYNAYARDKGFSIRRSSSHNVKNSTTIKNRTFCCSREGVQRPDKRE-ESSNYSRPETRCMCQARMKISLT-DGLYCIYEFEPEHNHILA 121 6*****************************************999.99999**************.*************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-21	34	121	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.6E-28	221	315	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MPMLQAEPTQ VENSTEDRIP KVGMKFCTEE EAYQFYNAYA RDKGFSIRRS SSHNVKNSTT 60 IKNRTFCCSR EGVQRPDKRE ESSNYSRPET RCMCQARMKI SLTDGLYCIY EFEPEHNHIL 120 ATSSQVHHLR SQRKITEAQL ASVENAKAVG ISNKATFDRM AKEAGRVENL GFTRVLEYLE 180 KKTSEDGKFF YSIQVDEDDL ITNIFWTDSK MVADYELFGD VVCFDTTYRK LNDGRPFGLL 240 VGVNNHKKTT IFGAALLYDE TAESFVWLFN TFLTAMSGKK PKTILTDEDA AMAKAIKIVL 300 LETHHRICVW HMNQNACKHL AGVVEDYKKF NKDFQNCIYD QEEEEEFINT WNNLLDKNTF 360 SADMVSTQRS ESMNIELKGY ISVKYDILTF FEHFERLVVD KRNEEVKCDF KATQSTPKLK 420 SELRILRHAA RIYTPAIFKV FQEQVMQTLN CDLFHCGESN AEKEYKIKVY GRRNEHVVKF 480 SALEVEVKCS CKKYLISTIS KKIPEHYILN RWTVDAKVVH IKSNSETHED PKTKLSKHRQ 540 ELCRMYIHLA NRAAESDETY LMA

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MPMLQAEPTQ VENSTEDRIP KVGMKFCTEE EAYQFYNAYA RDKGFSIRRS SSHNVKNSTT  60
IKNRTFCCSR EGVQRPDKRE ESSNYSRPET RCMCQARMKI SLTDGLYCIY EFEPEHNHIL  120
ATSSQVHHLR SQRKITEAQL ASVENAKAVG ISNKATFDRM AKEAGRVENL GFTRVLEYLE  180
KKTSEDGKFF YSIQVDEDDL ITNIFWTDSK MVADYELFGD VVCFDTTYRK LNDGRPFGLL  240
VGVNNHKKTT IFGAALLYDE TAESFVWLFN TFLTAMSGKK PKTILTDEDA AMAKAIKIVL  300
LETHHRICVW HMNQNACKHL AGVVEDYKKF NKDFQNCIYD QEEEEEFINT WNNLLDKNTF  360
SADMVSTQRS ESMNIELKGY ISVKYDILTF FEHFERLVVD KRNEEVKCDF KATQSTPKLK  420
SELRILRHAA RIYTPAIFKV FQEQVMQTLN CDLFHCGESN AEKEYKIKVY GRRNEHVVKF  480
SALEVEVKCS CKKYLISTIS KKIPEHYILN RWTVDAKVVH IKSNSETHED PKTKLSKHRQ  540
ELCRMYIHLA NRAAESDETY LMA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG101100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683537.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1W0W5Z8	0.0	A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment)
STRING	Pavir.J15432.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-99	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.6NG101100.1.p