PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG125900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 333aa    MW: 33988.2 Da    PI: 7.2826
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG125900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.7e-26121181259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg+ WrKYGqKe+++s++prsYYrCt++   gC++k++v+rs++dp+  +i Y geH+++
  Pavir.6NG125900.2.p 121 EDGHVWRKYGQKEIQNSPYPRSYYRCTHSsgqGCKAKRQVQRSETDPSKHVIAYYGEHTCR 181
                          8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.525115178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-26115181IPR003657WRKY domain
SuperFamilySSF1182901.96E-24118181IPR003657WRKY domain
SMARTSM007746.5E-34120182IPR003657WRKY domain
PfamPF031061.7E-24121181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAPSGGDVPV ERAAAAANDL VEARDGAAAL RAFLLELDDQ RAPWAQRVVD GVLSRLSSAM  60
SALDVGGAAA GGRSPATGSG SGGASRPQQS VSYSSGNTNK KRSFSRRSQR PSDKKITATL  120
EDGHVWRKYG QKEIQNSPYP RSYYRCTHSS GQGCKAKRQV QRSETDPSKH VIAYYGEHTC  180
RDHSTIPLAV HAAGAAPDRA NNLISFGHSG ANDNAAATGA ASSSQYLAMG RSTIGEHQLS  240
TSWCTSDDMF SSSAGSFMHV DELISAVVGS AGVTSTATAG SSALDRGGLG GMAGGGGGNA  300
SFPPSPNGLA GFVVGSLGSI GGDDDDLFSM DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-24116181469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG125900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796867.10.0WRKY transcription factor 55-like
TrEMBLA0A2T7CD130.0A0A2T7CD13_9POAL; Uncharacterized protein
STRINGPavir.J05812.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-25WRKY DNA-binding protein 70