PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG135800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 137aa MW: 15977.3 Da PI: 8.9325

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG135800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.3	3.4e-20	13	99	3	89
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 + +Y ++GF+vrk+ ++ sk+++++t+ ++vCs+eg +++++++ + ++ raetrt+Cka++ +++ ++evt+++leHnH l Pavir.6NG135800.1.p 13 WMAYDGRTGFDVRKRGTNVSKMDDKVTSCRYVCSNEGVSAKRQTE-HLRKCFRAETRTDCKARMINILDQeIRNYEVTDVVLEHNHLL 99 78999***********************************999.89999*******9875555559************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-16	14	99	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MKFKTPDEGW LLWMAYDGRT GFDVRKRGTN VSKMDDKVTS CRYVCSNEGV SAKRQTEHLR 60 KCFRAETRTD CKARMINILD QEIRNYEVTD VVLEHNHLLH IPETFHLMKS QRKISKLQVF 120 DIETYDDSGI RPKAAH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG135800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005514	1e-114	AP005514.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0035A24.
GenBank	AP014958	1e-114	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015688484.1	3e-73	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A3BT73	1e-65	A3BT73_ORYSJ; Uncharacterized protein
STRING	Sb02g042670.1	2e-70	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-10	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.6NG135800.1.p