PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG138600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 338aa MW: 37853.2 Da PI: 5.6444

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG138600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.3	1.1e-43	5	128	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp+GfrF Ptdeel+++yL++k+ + +++ +i++vd+yk+ePwd p + +e yfF++r +ky +g r++rat+ gyWk+tgkd Pavir.6NG138600.1.p 5 LPAGFRFFPTDEELITCYLARKAMDGSFTS-PAIRDVDLYKSEPWDYlP----CDLQEGYFFCTRGSKYLSGVRARRATRCGYWKSTGKD 89 799**********************999.78********9625....355789*************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+v+ ++g+lvg +ktLvfy+grap+gekt W mhey++ Pavir.6NG138600.1.p 90 KAVHGRDGRLVGRRKTLVFYRGRAPRGEKTGWAMHEYAM 128 ***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-49	4	152	IPR003441	NAC domain
PROSITE profile	PS51005	50.168	5	152	IPR003441	NAC domain
Pfam	PF02365	1.9E-24	6	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDQLLPAGFR FFPTDEELIT CYLARKAMDG SFTSPAIRDV DLYKSEPWDY LPCDLQEGYF 60 FCTRGSKYLS GVRARRATRC GYWKSTGKDK AVHGRDGRLV GRRKTLVFYR GRAPRGEKTG 120 WAMHEYAMGE RSSSALLGGA QSEWVICKVF MRKHPRGNER KVTTEETVHD QDSTPGHLLP 180 MVSVPDGCDG HEQEVAPPAA ATDSQHTISR SGAHVMEGNE KDHRQQQQQM VHEELLMIDH 240 HGWSGASPSW FNHDDWFNHD DQLGTHCSAL PVMQMQPDDA DYYLPALLES DGCDDLPNDA 300 GSGLLDTGGE VTRHAEMITS AAIDPLHLDC LYWNFGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-36	5	154	15	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG138600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822427.1	1e-167	NAC domain-containing protein 79-like
Swissprot	Q9FK44	3e-52	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1E5UJH1	1e-176	A0A1E5UJH1_9POAL; NAC domain-containing protein 100
STRING	Pavir.J11705.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14765	21	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	4e-55	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Pavir.6NG138600.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]