PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG140000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 237aa    MW: 25404.5 Da    PI: 5.6893
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG140000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.65.7e-3582172381
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaess 78 
                           ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l +             +sss s c  + +s 
  Pavir.6NG140000.1.p  82 YRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLHDAadppavvkgggeGSSS-STCcfK-DST 169
                          589************************************************************5555555555532222.344331.222 PP

                  TCP  79 sss 81 
                          +++
  Pavir.6NG140000.1.p 170 EEA 172
                          222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.98583141IPR017887Transcription factor TCP subgroup
PfamPF036347.5E-3383161IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MPPTASMSAW DGYGAQIFPS DMMLRHQETL EAVLQQPATV VAPLRAPEAA AAEGELRLRD  60
AAPAGADGAG AHGAAAPRRR PYRTDRHSKI RTAQGVRDRR MRLSVGVARE FFALQDRLGF  120
DKASKTVNWL LTQSKPAIDR LHDAADPPAV VKGGGEGSSS STCCFKDSTE EAAEKGRSRV  180
GGRVGPAAAL MEEHGGGEVD WITSDAAAAV PPAQPPQPMD ELEYYYQYYL QLEEMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1388141154Putative transcription factor PCF6
5zkt_B1e-1388141154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG140000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634578e-80BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds.
GenBankEU9756368e-80EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7268968e-80KJ726896.1 Zea mays clone pUT3439 TCP transcription factor (TCP15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822665.11e-111transcription factor TB1-like
TrEMBLA0A1E5VGN21e-114A0A1E5VGN2_9POAL; Uncharacterized protein
STRINGPavir.Fb01590.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-24TCP family protein