PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG152400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 86aa    MW: 9146.44 Da    PI: 7.8669
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG152400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.31e-1540782259
                         EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                         ++YY+C+s  gCp++k+v+ + +dp+++++tYeg+Hnh+
  Pavir.6NG152400.1.p 40 KGYYKCSSVrGCPARKHVDWCVDDPSMLIVTYEGDHNHN 78
                         68*****988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007744.4E-103579IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-174079IPR003657WRKY domain
SuperFamilySSF1182908.37E-144078IPR003657WRKY domain
PROSITE profilePS5081115.8474080IPR003657WRKY domain
PfamPF031061.1E-134077IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
KFLSFLDAGI LSEVVGGWCK AKCATGGISW TGGGLTDGIK GYYKCSSVRG CPARKHVDWC  60
VDDPSMLIVT YEGDHNHNRV ITQPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.104281e-64leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG152400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0953923e-40FP095392.1 Phyllostachys edulis cDNA clone: bphyst031l08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981825.15e-25protein WRKY1
RefseqXP_025796671.16e-25protein WRKY1
SwissprotQ32SG47e-26WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A317YD817e-24A0A317YD81_MAIZE; Protein WRKY1
STRINGPavir.J40679.1.p3e-52(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.17e-22WRKY DNA-binding protein 39