PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG153100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 359aa    MW: 39117.4 Da    PI: 7.9938
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG153100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.22.5e-26166226158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dg+ WrKYGqK+++gs+f+r Y+rC+++   gC+++++v+rs++dp+v+ +tY geH++
  Pavir.6NG153100.1.p 166 MEDGFVWRKYGQKDIRGSKFSRLYFRCSYKddhGCMARRQVQRSESDPSVFLVTYFGEHTC 226
                          58***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-25160226IPR003657WRKY domain
PROSITE profilePS5081122.136161224IPR003657WRKY domain
SuperFamilySSF1182905.36E-24163226IPR003657WRKY domain
SMARTSM007744.2E-37166228IPR003657WRKY domain
PfamPF031061.1E-24167226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGHPAGSFPQ SSTPRNRHKT KRRKRDRSDQ IRSDRVREQG RRRMAAMAAP ATAASELVAR  60
GRKSAASLRA MLGQQQPEGG GAGATPRGLQ VQDLVEQILR CFDRALAALR AATDTEDAAA  120
ASSARKRRKP EQGAVDPTPA TSSNSKRMRR LSGGERATRA EKRPTMEDGF VWRKYGQKDI  180
RGSKFSRLYF RCSYKDDHGC MARRQVQRSE SDPSVFLVTY FGEHTCCRGD DVGQSPAPFV  240
INFGGSTRDG QQLTRGSPWS SSCDGDGGLV VSETSDLCHS PEEKAELRAG TGNVAESSSE  300
QSTPPPPPVP ELTSMSSPEE EWDPLDGCLV WDDMGLGESL FDDIVDEFAP LDYAGLFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18166226868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11626RHKTKRRKRDR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG153100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809543.11e-146probable WRKY transcription factor 38
TrEMBLA0A3L6R9N81e-151A0A3L6R9N8_PANMI; WRKY transcription factor
STRINGPavir.J18239.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.28e-21WRKY family protein