PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG180900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 226aa    MW: 24042.3 Da    PI: 7.523
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG180900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.29.2e-131844228
                         ---SHHHHHHHHHHHHHHHHHHHHHHH CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELS 28
                         rie++  rqv fskRr+g++KKA+ELS
  Pavir.6NG180900.1.p 18 RIESDEARQVCFSKRRAGLFKKASELS 44
                         8*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.568944IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-9955IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-14979IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-91131IPR002100Transcription factor, MADS-box
PfamPF003194.0E-131844IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-93146IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAPPRRPSMG LQKIEIRRIE SDEARQVCFS KRRAGLFKKA SELSSAAPMS PPSSFPLPAF  60
SFGHPSVESI LDRFLDTSPE AGAGLSSVGD RAISELNLQY GELREQLDAE KVRQERADET  120
IRKERAARSQ AMAWLNADLG VMGYDDLVAF WGSLIGVQAA VAASADQVLR DALLVGRRGR  180
QPPQLASGAA FDVAAFGVGM HPPPGLAGVD RNGFGVQATI LGPSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG180900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806827.11e-125agamous-like MADS-box protein AGL29
TrEMBLA0A2S3HD091e-124A0A2S3HD09_9POAL; Uncharacterized protein
TrEMBLA0A2T7EG151e-124A0A2T7EG15_9POAL; Uncharacterized protein
STRINGPavir.Fb00782.1.p1e-160(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-13AGAMOUS-like 61