PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG187800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 260aa MW: 30149.9 Da PI: 6.1824

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG187800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.9	5.2e-16	12	99	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+ + GF+vrk++++k++ + ++t+ +fv +eg r +k++ + ++ ++aetrt+C+ ++++k+++ ++ +v+++ leHnH+l Pavir.6NG187800.1.p 12 FWLHYGGHRGFEVRKRYTNKRESDCKTTSCNFVYANEGLRVADKRD-HLTKCPQAETRTNCQVHMNLKLDRkKEFLKVSDVLLEHNHKL 99 999*************************************9999.999***************9988999*********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-11	12	99	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEFGSSDEAW AFWLHYGGHR GFEVRKRYTN KRESDCKTTS CNFVYANEGL RVADKRDHLT 60 KCPQAETRTN CQVHMNLKLD RKKEFLKVSD VLLEHNHKLH LPETLHLMVS HRNISYLQAF 120 EIETTDDEGI GPKATHELAC RQVGGPLNLS YTLRDHENYL QTKHQQEMAY GQAGSMLKYF 180 QDQIAENPLF QYALQMDCEE QIANILWADA KMVMDYAYFG DVVSYDTTFG TNMESRPFGV 240 FVEFNHFREI VVFDFSKSS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.44074	1e-164	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG187800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314647.1	1e-150	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453SK48	1e-146	A0A453SK48_AEGTS; Uncharacterized protein
TrEMBL	B9EY27	1e-146	B9EY27_ORYSJ; Uncharacterized protein
STRING	BRADI2G59232.1	1e-144	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-39	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.6NG187800.1.p