PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG205100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 149aa    MW: 15276.4 Da    PI: 10.8676
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG205100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004107129123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg  F     L  H+r+H
  Pavir.6NG205100.1.p 107 HQCHVCGLGFEMGQALGGHMRRH 129
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.8E-104872IPR007087Zinc finger, C2H2
SMARTSM003550.964870IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.4E-64870No hitNo description
PROSITE profilePS501579.934875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576676.4E-6102129No hitNo description
PfamPF139124.2E-10106132IPR007087Zinc finger, C2H2
SMARTSM003550.31107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MTKHPRDAAA GDVTLSLALS LGGLHAGEHG ASKRPRRAAG GGGGDGEFVC KTCSRAFASF  60
QALGGHRTSH LRGRHGLALG MPAAAPAAKQ QPASKDPKKQ QPAASHHQCH VCGLGFEMGQ  120
ALGGHMRRHR EEAAATAQAP PVLLQLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG205100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9761427e-33EU976142.1 Zea mays clone 676912 zinc finger DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466195.13e-53zinc finger protein ZAT12
TrEMBLA0A3L6TJ871e-57A0A3L6TJ87_PANMI; Zinc finger protein ZAT8-like
STRINGPavir.J00893.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.15e-18C2H2 family protein