PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG206000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 406aa    MW: 41262.8 Da    PI: 9.2802
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG206000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.76.2e-39113173262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          +e  lkcprC+stntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+s+
  Pavir.6NG206000.1.p 113 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSK 173
                          56789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-36101171IPR003851Zinc finger, Dof-type
PfamPF027011.5E-32117171IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.646117171IPR003851Zinc finger, Dof-type
PROSITE patternPS013610119155IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWNQHQQ QQQQAHHGQL PSGGGSGGGV EAGHAHHHQQ HHQLPPVPPP  60
GALMAPRPDM ATIVIAPSGG GGCGAGGGGP TGGSSVRPGS MTERARLAKI PQPEPGLKCP  120
RCESTNTKFC YFNNYSLSQP RHFCKACRRY WTRGGALRNV PVGGGCRRNK RSKSSKSSSS  180
SAASASATGG TSSSTSSTTT GGSSAAAAIM PPQGQLPFMA SLHHHLGGDH YSTGASRLGF  240
PGLSSQLDPV DYQLGAGTAI GLEQWRLPQI QQQFHFLSRP DAVPPPMSGI YPFDVEGHGD  300
ATAGGFAGQM LGGSSKVPGS AGLITQLASV KMEDNPPSTA MTSLSSPREF LGLPGNLQFW  360
GGGNGGASGN NGGTANAGGG GANTAPGSSW VDLSGFNSPS SGNIL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.200624e-71stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG206000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792577.11e-169dof zinc finger protein DOF2.4-like
TrEMBLA0A3L6SDN71e-173A0A3L6SDN7_PANMI; Dof zinc finger protein DOF2.4-like
STRINGPavir.J14743.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.22e-41OBF-binding protein 3