PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG224700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 261aa MW: 28211.1 Da PI: 9.4209

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG224700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.8e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Pavir.6NG224700.1.p 45 KPRLRWTADLHDRFVDAVAQLGGPDKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.6E-32	42	100	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.202	42	102	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.8E-24	45	99	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.33E-16	45	100	IPR009057	Homeodomain-like
Pfam	PF00249	2.7E-8	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	2.6E-21	140	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MFPGLIHHAG RPDAAAVEDA PRGGGGLGLH GHGGGPSVVL TADPKPRLRW TADLHDRFVD 60 AVAQLGGPDK ATPKAIMRTM GVKGLTLFHL KSHLQKYRLG SQSGKELTEQ SKDASYLMEA 120 QSGTNLSPRG STADVKESQE LKEAMRAQME VQRRLHEQVE VQKHMQIRME ANQKYIDTIL 180 DKAFKIVSEQ LSGFSISDQD LPDLASAGAM FSSTDPLGPS VFHQLSVSSV CLHSPVGSKA 240 LPHVTIDISQ KPPELKRKSR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	45	98	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	45	98	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	45	98	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	45	98	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.1086	0.0	callus\| leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG224700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039053	0.0	BT039053.1 Zea mays full-length cDNA clone ZM_BFb0367F20 mRNA, complete cds.
GenBank	JX469981	0.0	JX469981.1 Zea mays subsp. mays clone UT3341 G2-like transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821023.1	1e-157	protein PHR1-LIKE 2-like
Swissprot	Q94A57	1e-68	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2T8IGC6	1e-156	A0A2T8IGC6_9POAL; Uncharacterized protein
STRING	Pavir.Fb00789.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	4e-69	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.6NG224700.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]