PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG226500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 175aa    MW: 19235.5 Da    PI: 7.5088
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG226500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.41.8e-143691358
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
                         elkr rr+ +NRe+A+rsRqRK++ ++ L   v++L +  ++L+  l+  ++++a 
  Pavir.6NG226500.1.p 36 ELKRKRRMDSNRESAKRSRQRKQQHLDDLNSQVDQLRTTKQQLITALNITTQNYAV 91
                         79******************************************988877777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-123498IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.0593678IPR004827Basic-leucine zipper domain
PfamPF001701.1E-113689IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-113889No hitNo description
Gene3DG3DSA:1.20.5.1702.5E-1138112No hitNo description
CDDcd147021.26E-153990No hitNo description
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSLSGGTLSS GTSSGSSHGN PSFGSEADME LQARMELKRK RRMDSNRESA KRSRQRKQQH  60
LDDLNSQVDQ LRTTKQQLIT ALNITTQNYA VAEAQNSVLR TQMMELESRL SALRDIICYM  120
NANQVSNAAT ISANNPSAIM SATANYDDPF GASAWNSGME MVQQPIDHLL YQCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15055KRSRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.10030.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG226500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822603.11e-116bZIP transcription factor 44-like isoform X1
TrEMBLA0A2S3I2091e-115A0A2S3I209_9POAL; Uncharacterized protein
STRINGPavir.Fb01406.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.13e-25G-box binding factor 6