PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG231200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 217aa    MW: 21803.7 Da    PI: 8.0443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG231200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.94e-212979256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         + +GVr+++ +gr++AeIrdp     r +r++lg+f+t+eeAa+a++aa+++l+g+
  Pavir.6NG231200.1.p 29 RLRGVRRRP-WGRYAAEIRDP---A-RkARVWLGTFDTPEEAARAYDAAARRLRGP 79
                         679******.**********8...2.35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.87E-192886No hitNo description
PfamPF008473.5E-152878IPR001471AP2/ERF domain
PROSITE profilePS5103224.1712986IPR001471AP2/ERF domain
SMARTSM003806.4E-342992IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-222986IPR016177DNA-binding domain
PRINTSPR003676.6E-103041IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-303187IPR001471AP2/ERF domain
PRINTSPR003676.6E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAPKRSPSPA GSSGGSAVCA PAPAEEQPRL RGVRRRPWGR YAAEIRDPAR KARVWLGTFD  60
TPEEAARAYD AAARRLRGPR AATNFPSAQE AKAVAAAAPA ASASGSAVLS EDASSSSSCS  120
RDSPLAVTLA AAAPASLDLG LALPAVAAAQ PYHMFLDPAA TMVAVAPALL QFLPPKSEEE  180
QSCSGSSSSS SVVLDAAPAV GLGLDLNLAL PAGMVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-221287273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG231200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821472.13e-86ethylene-responsive transcription factor ERF098-like
TrEMBLA0A2T7D4Q37e-76A0A2T7D4Q3_9POAL; Uncharacterized protein
STRINGPavir.Fb00951.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.13e-10ERF domain protein 11