PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG242000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 231aa    MW: 24619.3 Da    PI: 4.6938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG242000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-172473255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  Pavir.6NG242000.1.p 24 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 73
                         7******99.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.98E-182484No hitNo description
SuperFamilySSF541711.7E-182483IPR016177DNA-binding domain
PfamPF008472.8E-102473IPR001471AP2/ERF domain
SMARTSM003802.2E-322488IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-282484IPR001471AP2/ERF domain
PROSITE profilePS5103221.8652482IPR001471AP2/ERF domain
PRINTSPR003671.5E-82536IPR001471AP2/ERF domain
PRINTSPR003671.5E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDDDGAGASR SDGDGSPQPP AERRYKGVRL RKWGRWVSEI RMPNSRERIW LGSYESAEKA  60
ARAFDAAAVC LRGSRAGSLN FPESPPNVRH IPGALLTPEQ IQAEAVRHAK QPASPVASLA  120
STAVSPSQQA APAGGASMDR TALSLPSTYG SGAALAGSDD ALDWSFMDTL PSMPASSAAT  180
TAVHHIVPAL DDYFMYGSPH PVMMPSGEES QDMIDDEDDR TFISDDLWRF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1224821472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG242000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283821e-108KJ728382.1 Zea mays clone pUT6665 AP2-EREBP transcription factor (EREB199) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822439.11e-125ethylene-responsive transcription factor ERF017-like
TrEMBLA0A3L6PN731e-127A0A3L6PN73_PANMI; Uncharacterized protein
STRINGPavir.Fb01602.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-24ERF family protein