PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG244600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 460aa MW: 50062 Da PI: 10.1123

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG244600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	96.7	2.2e-30	205	302	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 ++ r+ws eDei++L +lid++ak+g + +d+ ++++++++++ +++s++ql++KirrLK+K+k v++ak+g++p++ +eh+++++ Pavir.6NG244600.1.p 205 RPPRVWSPEDEITILFALIDYRAKKGRlpASIQDTGKVHSQISGQLTANASTTQLSDKIRRLKHKYKLLVTRAKNGRDPDLPTEHERDVY 294 578**********************777888***************************************************** PP DUF573 90 elskkiWg 97 elsk++Wg Pavir.6NG244600.1.p 295 ELSKRVWG 302 *****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.3E-28	207	302	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MAPKRPAAAG APPGSGSDAS DREAGDTPPP NLRPNAAALS STPTSAGADF AAASDSDAGG 60 RASPPRRGDR KGPPRDRLDS DADADARSGG RAPSPRRRGE RSPSFHSDSD ADAAGRVRSP 120 RRNRERTPRL RSDSDSDNSL APAGSEDEGA GDASPLPRAR RSSRIETSNI KPVSTRPMEV 180 PRRASAGSSR RSSKRRHSSP EQQKRPPRVW SPEDEITILF ALIDYRAKKG RLPASIQDTG 240 KVHSQISGQL TANASTTQLS DKIRRLKHKY KLLVTRAKNG RDPDLPTEHE RDVYELSKRV 300 WGFTSGGALG GSRAYEDAGD AESNEEQEIE ESDEDMENGW EGHEHTSKKP KASRFENGNG 360 NALAVVGRAS HGNGSGRDDT EKGKQTYPYL WEAVEELSKE HPSGPVFRKA FGVLQKSKAR 420 AMEEKLRTFR MSEIRQQLRR MDLMKETVEM VLDALDGAY*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MAPKRPAAAG APPGSGSDAS DREAGDTPPP NLRPNAAALS STPTSAGADF AAASDSDAGG  60
RASPPRRGDR KGPPRDRLDS DADADARSGG RAPSPRRRGE RSPSFHSDSD ADAAGRVRSP  120
RRNRERTPRL RSDSDSDNSL APAGSEDEGA GDASPLPRAR RSSRIETSNI KPVSTRPMEV  180
PRRASAGSSR RSSKRRHSSP EQQKRPPRVW SPEDEITILF ALIDYRAKKG RLPASIQDTG  240
KVHSQISGQL TANASTTQLS DKIRRLKHKY KLLVTRAKNG RDPDLPTEHE RDVYELSKRV  300
WGFTSGGALG GSRAYEDAGD AESNEEQEIE ESDEDMENGW EGHEHTSKKP KASRFENGNG  360
NALAVVGRAS HGNGSGRDDT EKGKQTYPYL WEAVEELSKE HPSGPVFRKA FGVLQKSKAR  420
AMEEKLRTFR MSEIRQQLRR MDLMKETVEM VLDALDGAY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.3436	0.0	callus\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG244600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821022.1	0.0	serine/arginine repetitive matrix protein 1-like
TrEMBL	A0A3L6RLW1	0.0	A0A3L6RLW1_PANMI; Serine/arginine repetitive matrix protein 1-like
STRING	Pavir.J10638.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2671	35	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	9e-15	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pavir.6NG244600.1.p