PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG263700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 209aa MW: 22210.4 Da PI: 5.9297

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG263700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	167	2.4e-52	69	172	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql+ fw++q +e +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaav+rt+ Pavir.6NG263700.1.p 69 QLNLFWAEQfreVEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAVARTE 158 7999**998899************************************************************************ PP NF-YC 88 ifdflvdivprdel 101 +fdflvdivprde Pavir.6NG263700.1.p 159 VFDFLVDIVPRDEA 172 **********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.14E-30	60	163	IPR009072	Histone-fold
Pfam	PF00808	2.2E-21	91	154	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.1E-36	92	169	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MEPKSTTPPP APVMGAPVAY PPPPAAAYAA GPYAHAPAAA LYPPPPPPPP PHPAAAAVQQ 60 QLGPAAQQQL NLFWAEQFRE VEATTDFKNH NLPLARIKKI MKADEDVRMI AAEAPVVFAR 120 ACEMFILELT HRGWAHAEEN KRRTLQKSDI AAAVARTEVF DFLVDIVPRD EAKDAEAAAA 180 AGMGAGIPHP AAGMPAADPM GYYYVQPQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	6e-57	77	169	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	147	RRTLQKS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG263700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU974115	1e-167	EU974115.1 Zea mays clone 440194 nuclear transcription factor Y subunit C-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973798.1	3e-90	nuclear transcription factor Y subunit C-6, partial
Swissprot	Q9XE33	9e-79	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	A0A0Q3P9D1	1e-87	A0A0Q3P9D1_SETIT; Uncharacterized protein
TrEMBL	B6UA50	4e-87	B6UA50_MAIZE; Nuclear transcription factor Y subunit C-2
STRING	Pavir.Fb01850.1.p	1e-143	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-59	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Pavir.6NG263700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]