PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG265600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 690aa    MW: 75161.6 Da    PI: 6.0506
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG265600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.9e-32281337259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g+H h+
  Pavir.6NG265600.1.p 281 EDGYNWRKYGQKQVKNSEHPRSYYKCTHPNCPVKKKVERSQ-EGHIMEIVYKGSHSHP 337
                          7****************************************.***************7 PP
2WRKY104.55.8e-33493551159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  Pavir.6NG265600.1.p 493 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCSVRKHVERASNDLKSVITTYEGKHNHE 551
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-29273339IPR003657WRKY domain
PROSITE profilePS5081122.986275339IPR003657WRKY domain
SuperFamilySSF1182904.84E-26277339IPR003657WRKY domain
SMARTSM007741.6E-35280338IPR003657WRKY domain
PfamPF031065.1E-25281337IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-36479553IPR003657WRKY domain
SuperFamilySSF1182901.03E-28485553IPR003657WRKY domain
PROSITE profilePS5081137.459488553IPR003657WRKY domain
SMARTSM007742.1E-37493552IPR003657WRKY domain
PfamPF031062.0E-25494551IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MAGTDNRRAL MEDWMLPSPS PRTLMSSFLN EEFSSGPFSS IFGDNSSNKP QDGIEKTKTL  60
VDLSVEETVQ DTKAPLQLES NLFSTNQKST SHGSLAERMA ARAGFGVLKI DTSRVSSSAP  120
IRSPVTIPPG VSPRELLESP VFLPNAIAQP SPTTGKLPFL MPNNFKSMIS SVPKKVEDQS  180
HDDCAFSFQT ILRSKPPSFS TVDKGLGAFH QNQSLNDSQQ ELSLQVSTTA TKDETEENLV  240
KPSTCDSMLD NDHPSPADEQ VESEENQNGE DASVSVIAPD EDGYNWRKYG QKQVKNSEHP  300
RSYYKCTHPN CPVKKKVERS QEGHIMEIVY KGSHSHPLPP PNRRPSVPSS HVIDLQADGS  360
ENFRSKPGHN TETSREMAPN DHFQDVHSVG LERNLSGSLT TTEIADTCVM ESQEAVDVSP  420
TVSSNEKDDR ATHGTIPLTY GRDEDETESK RRKMEVSATT NATTNAFDMA TMASRAVWEP  480
QIVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT YAGCSVRKHV ERASNDLKSV  540
ITTYEGKHNH EVPAARNSSG QPNSSSSAAP QCSNLHQRPE PAQPSIPQLS AAAAYGSLCL  600
PPQLSAASGG FSFGMLPPGM AVPVPSLRTF MPASVPGQPP KMQGCAGLVL PRGEVKVNPE  660
EQSQLQVTNG NAMAAYQQFM GRLPQGPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36281554878Probable WRKY transcription factor 4
2lex_A3e-36281554878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.65530.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG265600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820553.10.0probable WRKY transcription factor 2
RefseqXP_025820554.10.0probable WRKY transcription factor 2
RefseqXP_025820555.10.0probable WRKY transcription factor 2
RefseqXP_025820556.10.0probable WRKY transcription factor 2
TrEMBLA0A2T7D8Y40.0A0A2T7D8Y4_9POAL; Uncharacterized protein
STRINGPavir.J35763.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-116WRKY DNA-binding protein 2