PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG274300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 258aa    MW: 27621 Da    PI: 7.5016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG274300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08177217954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Pavir.6NG274300.1.p 177 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 217
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12173227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14173229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-6177217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-6191222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDFDMLNSHP EAQLELMNAM LQLEQLTAFP DHHGAMMMVP STPPPSPPCM QQQAHHHFSS  60
SVPHHMSVGG AANGRATYHD HHQYYSSSAV TSHASCNGSA RSEYAAHQDY PAAAGGGGGG  120
GGNGGMDDGA TAVGSSAMRE MIFRVAALQP VNIDPEMVRP PKRRNVRIST DPQSVAARMR  180
RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKTQ VQSLERAAAA SGRRPAPPAA  240
DDDGAAAPYP GRFSGQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RPPKRR
2177182RMRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG274300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269731e-155KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821983.11e-132transcription factor HEC2-like
TrEMBLA0A2S3I3591e-130A0A2S3I359_9POAL; Uncharacterized protein
STRINGPavir.Fb01689.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.15e-38bHLH family protein