PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG276100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 250aa    MW: 26332.3 Da    PI: 8.2323
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG276100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-057597123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC++C + F ++  L  H++ H
  Pavir.6NG276100.1.p 75 FKCNYCQRKFYTSQALGGHQNAH 97
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.77E-772102No hitNo description
Gene3DG3DSA:3.30.160.609.4E-473101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.57275102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKLEGAGEEE VQAREKKEDA PAKELDLLGA LGSEVPEVKA VEAVPSGKGK EKATMVAEEE  60
KSPAASGGGE KKRSFKCNYC QRKFYTSQAL GGHQNAHKRE RSLAKREAAA AAAAAAAAGR  120
GLYGGADPFM PPHHLRLPHA WPYSAGTGRP SSFLEFGRGS AAAPFYGAYH GWPAGHAQPS  180
MAGLARHDRP AYPPHGYGYS TSSSRAPAPA PTVLDSGMPG LRWVGGEAQE EGQQEEEAQS  240
SKIDLNLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG276100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-37HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822315.15e-94zinc finger protein GIS3-like
TrEMBLA0A3L6RLA41e-149A0A3L6RLA4_PANMI; Uncharacterized protein
STRINGPavir.Fb02023.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-16zinc finger protein 4