PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG291500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 193aa    MW: 19996.1 Da    PI: 4.4672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG291500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-19557155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                         + ++GVr++ + grWv+e+r+p   g +  r ++g+f+tae Aa+a++aa+++l g
  Pavir.6NG291500.1.p  5 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEAAARAHDAAMLALCG 57
                         579******************9...5445***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-14557IPR001471AP2/ERF domain
SMARTSM003802.4E-20671IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-27667IPR001471AP2/ERF domain
PROSITE profilePS5103220.705665IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-18667IPR016177DNA-binding domain
PRINTSPR003675.9E-5718IPR001471AP2/ERF domain
PRINTSPR003675.9E-53147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
ETRHPVFRGV RRRGRAGRWV CEVRVPGSRG DRLWVGTFDT AEAAARAHDA AMLALCGADA  60
SLNFADSAWL LHVPRAVSAA AELPPLADVQ RAATEAVAGF LRRHGGDAPA VDAAPQHNAA  120
SSSSTPAVEA PPAARSALDN GSLLELDVFG GMDAGSYYAS LAQGLLIDPP PTAADCPEDD  180
EDCDAGEVEL WS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG291500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9582271e-109EU958227.1 Zea mays clone 1679636 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820831.11e-90dehydration-responsive element-binding protein 1J-like
SwissprotA2YXQ71e-57DRE1J_ORYSI; Dehydration-responsive element-binding protein 1J
SwissprotQ0J3Y71e-57DRE1J_ORYSJ; Dehydration-responsive element-binding protein 1J
TrEMBLA0A2T7DA999e-99A0A2T7DA99_9POAL; Uncharacterized protein
STRINGPavir.J32829.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-15C-repeat-binding factor 4