PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG293600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 369aa MW: 39849.2 Da PI: 4.4933

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG293600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	29.3	2.5e-09	22	135	29	127
NAM 29 eleevikevdiykvePwdLpk...........kvka..eekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelv 100 ++ +++++vd++++ P+dL + ++ wyf+++++ k+++gk r++ a ++ W++ + k+v+ Pavir.6NG293600.1.p 22 DF-TFVHRVDVCSAAPEDLVAnlepapgtdlaG--DdgYSSVWYFYCPKRYKNTQGKpsghRQRAiAGGDACWHSETRPKPVKGLVAG-- 106 44.6799**********74467878775431..12234499****999766555244443344778******884333.. PP NAM 101 glkktLvfy..kgrapkgektdWvmheyr 127 + L + +g++++ ++ W+m ey Pavir.6NG293600.1.p 107 ATLCNLSYGrkEGSSRSFNRLGWCMTEYD 135 3444555554478889999*******6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	14.627	1	151	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-12	14	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MAKADDASSV ALLRGLRSGA ADFTFVHRVD VCSAAPEDLV ANLEPAPGTD LAGDDGYSSV 60 WYFYCPKRYK NTQGKPSGHR QRAIAGGDAC WHSETRPKPV KGLVAGATLC NLSYGRKEGS 120 SRSFNRLGWC MTEYDEEAGC DGHVLCKVYR SSSSLAKGKL KASSTSTNPT LSEQAAVQCS 180 SASKRKATAD HPQARPSKIS HAQASASNYY FVDQEFYHQM QEPLFTDDQM GMTMPVCVDY 240 ESLFPADEEQ EQDTLVTAEM EQLLQNTMAL VAAEDEQSQQ NTLVTAEEEQ LLQNTLAIAE 300 EQLRQNTPFS MDGLLGGLLG GPGYGEYGGC SWSTQVTMDE LFSRSSGCYG TPTAMAPPDA 360 GFFEGLAF*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MAKADDASSV ALLRGLRSGA ADFTFVHRVD VCSAAPEDLV ANLEPAPGTD LAGDDGYSSV  60
WYFYCPKRYK NTQGKPSGHR QRAIAGGDAC WHSETRPKPV KGLVAGATLC NLSYGRKEGS  120
SRSFNRLGWC MTEYDEEAGC DGHVLCKVYR SSSSLAKGKL KASSTSTNPT LSEQAAVQCS  180
SASKRKATAD HPQARPSKIS HAQASASNYY FVDQEFYHQM QEPLFTDDQM GMTMPVCVDY  240
ESLFPADEEQ EQDTLVTAEM EQLLQNTMAL VAAEDEQSQQ NTLVTAEEEQ LLQNTLAIAE  300
EQLRQNTPFS MDGLLGGLLG GPGYGEYGGC SWSTQVTMDE LFSRSSGCYG TPTAMAPPDA  360
GFFEGLAF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG293600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463549.1	2e-51	uncharacterized protein LOC8079646
TrEMBL	A0A2T7BZK1	0.0	A0A2T7BZK1_9POAL; Uncharacterized protein
STRING	Pavir.Fb02148.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Pavir.6NG293600.1.p