PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG303300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 151aa    MW: 15844.3 Da    PI: 11.4753
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG303300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.2e-0934731254
                  AP2 12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         +  ++AeIr ps+   r r+++g+f+ a +Aa a++aa+  ++
  Pavir.6NG303300.1.p 34 WAGYAAEIRIPSS---RSRVWIGRFDHALQAALAYDAAMFLFY 73
                         55578*****965...4*********************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.5112186IPR001471AP2/ERF domain
SMARTSM003809.0E-72192IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-93386IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-143386IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MASSAPTSGP AAGAQSPRVH QRRGLAASGC TGTWAGYAAE IRIPSSRSRV WIGRFDHALQ  60
AALAYDAAMF LFYGQKLPKL RRYNFPATPR PNVPEVVRKG LTVANVKAIA EKHGRSFGHF  120
LPLPPAPMIP AAPPAVAPSQ MAEAGGAAAS M
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG303300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822467.14e-56ethylene-responsive transcription factor ABI4-like
TrEMBLA0A2S3I3V51e-54A0A2S3I3V5_9POAL; Uncharacterized protein
STRINGPavir.Fb02057.1.p8e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.15e-08ERF family protein