PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG303400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 192aa    MW: 20001.6 Da    PI: 4.6493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG303400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.33.8e-133381456
                  AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +GVr +k +grW+AeIr+p++   r + ++g+fg+   Aa a++aa  +++ge
  Pavir.6NG303400.1.p 33 TGVRPRK-SGRWAAEIRVPTT---REKLWIGTFGSDRLAALAYDAAVFCFYGE 81
                         69*9777.8*********976...49*********99**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-133192IPR016177DNA-binding domain
PROSITE profilePS5103217.9653192IPR001471AP2/ERF domain
SMARTSM003801.7E-183198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-193192IPR001471AP2/ERF domain
CDDcd000183.66E-183494No hitNo description
PfamPF008474.7E-83480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAALATNGSG APWSGGGGQP GVAFGRQKQS EWTGVRPRKS GRWAAEIRVP TTREKLWIGT  60
FGSDRLAALA YDAAVFCFYG EDLPKTRRFN FPVAPRPDVP EILCGHLSVA SVKAIAELHA  120
RTVDALLPPV CDATAALAAV AATEAGPSAD ATPTTMADNS NLVVASAVDE DQFSFDPDVI  180
AGLMGLVPDE Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG303400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822464.13e-93ethylene-responsive transcription factor ERF011-like
TrEMBLA0A3L6RGE51e-96A0A3L6RGE5_PANMI; Uncharacterized protein
STRINGPavir.Fb01907.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.16e-18ERF family protein