PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG307100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 631aa    MW: 72583.7 Da    PI: 8.3476
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG307100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.79.3e-2424111289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          f+ +Y+ ++GF+vrk+ +++s+++g++t+ ++vCs+eg+r++++++ + ++  raetrt+Cka++++++++  +++ev++++leHnH+l
  Pavir.6NG307100.1.p  24 FWVAYGGRTGFDVRKRCTNTSTMDGKVTSCRYVCSNEGHRRKKESE-HARKCFRAETRTDCKARMVISLDRgAENYEVIDVVLEHNHPL 111
                          99****************************************9999.89999*******************9***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1924111IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.385447483IPR007527Zinc finger, SWIM-type
PfamPF044343.9E-6457480IPR007527Zinc finger, SWIM-type
SMARTSM005756.6E-6458485IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MVEVDRKIPE LGLRFSNPDE GWLFWVAYGG RTGFDVRKRC TNTSTMDGKV TSCRYVCSNE  60
GHRRKKESEH ARKCFRAETR TDCKARMVIS LDRGAENYEV IDVVLEHNHP LHLPQTFHLM  120
KSQRKISKLQ AFEIETTDDS GIRPKAAHEL ATRQVGGPLN LSYTCRDRKN YLQSRRQREL  180
AFGQAGSMLK YFHDKNAENP SFQYALQLDC EEHITNIFWA DAKMVLDYAH FGDVVTFDTT  240
FGTNKEYRPF GVFVGLNQFR ETTIFGAALL FDETEASFTC ACMFEHEDER SFEEAFQNMR  300
SKVHKQTWLD SIYKVKEKCA ECYMRDVFSL GVRSTQLSES FNNALKNHLK SDFDIIRFLK  360
HFERSVQEKR DKELESEFEA RKNLPRRCMC TPMLVQASEV YSPVIFEAFQ SEYERSMAAC  420
ARGLDREHKY AVAVGNLLGE VSSELEYTVI GDPLNQTASC SCRMFERTGI LCAHGLKVLD  480
LMNIKKLPPH YILKRWTREA RNGNIQDRQG RNVFHNLAHK VAHSPECCVV LENALDCLCR  540
HLEEKLNVLS SGTTNEPCED KVNVDPDMQQ GEDLLSGAQL KKKEVQSNKS RRTRTFIDKL  600
RKGKRKNPKS AVPTKKGVKV CHMQAAHLYM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG307100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040050.0AP004005.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1188_F05.
GenBankAP0055210.0AP005521.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0477F03.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619119.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB9EY270.0B9EY27_ORYSJ; Uncharacterized protein
STRINGBRADI2G05367.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-45FAR1-related sequence 5