PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG331900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 243aa    MW: 25563.2 Da    PI: 10.8859
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG331900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.62.3e-31201611128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk....rknr.atksgyWk 84 
                          lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d+y+++Pwd+p++++a+e e yfF+ r      g        r at+sg+Wk
  Pavir.6NG331900.1.p  20 LPPGFRFRPTDEELVVQYLRRKALGVPLPA-AVIPVVrDLYSLDPWDIPAAADASEGEKYFFAVRPAGVGGGCsgklGGARaATASGRWK 108
                          79****************************.8899999***********88888888********99888443233344565899***** PP

                  NAM  85 atgkdkevlsk.....kgelvglkktLvfykgrapkge....ktdWvmheyrl 128
                            gk+k+v+       ++ lvg+k+ ++f   r++k++     + Wvmheyrl
  Pavir.6NG331900.1.p 109 PAGKEKPVVLPrpcggGSLLVGVKRAMTFAPRRKKKASsaalAAGWVMHEYRL 161
                          *********99899877777**********544444442234789******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-4016199IPR003441NAC domain
PROSITE profilePS5100541.11220199IPR003441NAC domain
PfamPF023653.0E-2021161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MESAPVLVRH AGGVAALRQL PPGFRFRPTD EELVVQYLRR KALGVPLPAA VIPVVRDLYS  60
LDPWDIPAAA DASEGEKYFF AVRPAGVGGG CSGKLGGARA ATASGRWKPA GKEKPVVLPR  120
PCGGGSLLVG VKRAMTFAPR RKKKASSAAL AAGWVMHEYR LAAPLHKNFT ARTVFSWQSR  180
GCSLAQAEGE WVVCRVFQRS SNSNRPRRRA TPAGGHAAAA SPSSSSTASC VTDGSDQEEV  240
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-262020517171NO APICAL MERISTEM PROTEIN
1ut4_B1e-262020517171NO APICAL MERISTEM PROTEIN
1ut7_A1e-262020517171NO APICAL MERISTEM PROTEIN
1ut7_B1e-262020517171NO APICAL MERISTEM PROTEIN
4dul_A1e-262020517171NAC domain-containing protein 19
4dul_B1e-262020517171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.39610.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG331900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9555061e-109EU955506.1 Zea mays clone 1534835 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820406.11e-123NAC domain-containing protein 18-like isoform X1
TrEMBLA0A3L6RHL21e-126A0A3L6RHL2_PANMI; NAC domain-containing protein 18-like
STRINGSi014408m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.14e-32NAC domain containing protein 41