PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG331900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 231aa    MW: 24095.6 Da    PI: 10.6584
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG331900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.81.9e-31201611128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk....rknr.atksgyWk 84 
                          lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d+y+++Pwd+p++++a+e e yfF+ r      g        r at+sg+Wk
  Pavir.6NG331900.2.p  20 LPPGFRFRPTDEELVVQYLRRKALGVPLPA-AVIPVVrDLYSLDPWDIPAAADASEGEKYFFAVRPAGVGGGCsgklGGARaATASGRWK 108
                          79****************************.8899999***********88888888********99888443233344565899***** PP

                  NAM  85 atgkdkevlsk.....kgelvglkktLvfykgrapkge....ktdWvmheyrl 128
                            gk+k+v+       ++ lvg+k+ ++f   r++k++     + Wvmheyrl
  Pavir.6NG331900.2.p 109 PAGKEKPVVLPrpcggGSLLVGVKRAMTFAPRRKKKASsaalAAGWVMHEYRL 161
                          *********99899877777**********544444442234789******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-4116187IPR003441NAC domain
PROSITE profilePS5100541.97620187IPR003441NAC domain
PfamPF023652.6E-2021161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MESAPVLVRH AGGVAALRQL PPGFRFRPTD EELVVQYLRR KALGVPLPAA VIPVVRDLYS  60
LDPWDIPAAA DASEGEKYFF AVRPAGVGGG CSGKLGGARA ATASGRWKPA GKEKPVVLPR  120
PCGGGSLLVG VKRAMTFAPR RKKKASSAAL AAGWVMHEYR LAAPLHKNGC SLAQAEGEWV  180
VCRVFQRSSN SNRPRRRATP AGGHAAAASP SSSSTASCVT DGSDQEEVSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-292019317171NO APICAL MERISTEM PROTEIN
1ut4_B2e-292019317171NO APICAL MERISTEM PROTEIN
1ut7_A2e-292019317171NO APICAL MERISTEM PROTEIN
1ut7_B2e-292019317171NO APICAL MERISTEM PROTEIN
3swm_A2e-292019320174NAC domain-containing protein 19
3swm_B2e-292019320174NAC domain-containing protein 19
3swm_C2e-292019320174NAC domain-containing protein 19
3swm_D2e-292019320174NAC domain-containing protein 19
3swp_A2e-292019320174NAC domain-containing protein 19
3swp_B2e-292019320174NAC domain-containing protein 19
3swp_C2e-292019320174NAC domain-containing protein 19
3swp_D2e-292019320174NAC domain-containing protein 19
4dul_A2e-292019317171NAC domain-containing protein 19
4dul_B2e-292019317171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.39610.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG331900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9555061e-126EU955506.1 Zea mays clone 1534835 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820406.11e-127NAC domain-containing protein 18-like isoform X1
TrEMBLA0A3L6RHL21e-130A0A3L6RHL2_PANMI; NAC domain-containing protein 18-like
STRINGSi014408m1e-125(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.12e-33NAC domain containing protein 41