PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG334800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 320aa    MW: 34319.4 Da    PI: 12.2322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG334800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.41.3e-2172122155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++aa+++++g
  Pavir.6NG334800.1.p  72 PRYRGVRQRP-WGKWAAEIRDPV----KaTRVWLGTFDTAEDAARAYDAAALRFKG 122
                          68********.**********64....55************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-1972132No hitNo description
PfamPF008471.8E-1472122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-3373130IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2373131IPR016177DNA-binding domain
PROSITE profilePS5103225.50173130IPR001471AP2/ERF domain
SMARTSM003807.3E-3673136IPR001471AP2/ERF domain
PRINTSPR003672.8E-127485IPR001471AP2/ERF domain
PRINTSPR003672.8E-1296112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTRFRHVGRR RSTPSSSRRS RTSSAPGGGR ARARRPARLS IQTIPSVVLG LAHQSGAAPS  60
TAPASSELLP RPRYRGVRQR PWGKWAAEIR DPVKATRVWL GTFDTAEDAA RAYDAAALRF  120
KGAKAKLNFP PAAFHGAQGG QQHDGVAVAS PAPGYHRHAA AHLLADRPQF TPANPQRRHH  180
LWNKFKPQRR TVRSLIADRP QSILQDNQRR HRLWTKTNLT GGPSAPPRRT SSSGTGTLHH  240
LHGAAPAAAG GARAHHYQEV EFLDLSQYAH ILQSGDLDLL AVSGGLTPGQ SSSSSSSATA  300
ASSSAAPPEE PPPRREPPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2274130663ATERF1
3gcc_A3e-2274130663ATERF1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.9166e-45callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG334800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939963e-71FP093996.1 Phyllostachys edulis cDNA clone: bphyem120j10, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.15e-22related to AP2 6