PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG343600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 257aa    MW: 27456.1 Da    PI: 5.9585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG343600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.7e-0997142454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er  Rd++  +f eLr  +P+       +++Ka+ L  A  YI +L
  Pavir.6NG343600.1.p  97 THVEAERLQRDKLHRRFCELRAAVPTV-----SRMDKASLLFDAATYIAQL 142
                          799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.99593142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-896147No hitNo description
SuperFamilySSF474591.57E-1396160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1297155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-697142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-699148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDEMVCPASS GSSPSPATFF STTGQHQELE FMPCDVLLEG WLEDDDSMDG PPDGISCGDE  60
GSRSPGNDVL LSGEPPAPAP KRRGRKPGPR SNGPALTHVE AERLQRDKLH RRFCELRAAV  120
PTVSRMDKAS LLFDAATYIA QLRSRVKQLE SENRLAAAAA AATPVAATYS VGVQENLEVR  180
MVGRDAAALR LTTAARHAPA RFMLALQWLD LPVQHASVCL VGGMTVQDAV VDVPAAALRD  240
ERALRAALLH QLQQTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1696152763Transcription factor MYC2
5gnj_B7e-1696152763Transcription factor MYC2
5gnj_E7e-1696152763Transcription factor MYC2
5gnj_F7e-1696152763Transcription factor MYC2
5gnj_G7e-1696152763Transcription factor MYC2
5gnj_I7e-1696152763Transcription factor MYC2
5gnj_M7e-1696152763Transcription factor MYC2
5gnj_N7e-1696152763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG343600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822542.11e-121transcription factor MYC3-like
TrEMBLA0A3L6RG361e-121A0A3L6RG36_PANMI; Transcription factor MYC2-like
STRINGPavir.Fb02348.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-19bHLH family protein