PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG343900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 199aa    MW: 21447.4 Da    PI: 12.6339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG343900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.00024560318
                         HHHHHHHHHHHHHHHH CS
                  HLH  3 rahnerErrRRdriNs 18
                         ++h e+Er+RRd++N 
  Pavir.6NG343900.1.p 45 MTHVEVERQRRDKLNR 60
                         69*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MPILTANRTT ACWTMAPCWK IGATSPRGPR ATKNNPGPRS NGTTMTHVEV ERQRRDKLNR  60
LSSASSGPPC PPCRGWTRRP SWPTRPPTSP SCTAALTSSR PRTSLPRRRP PHPGEPGGAN  120
GRERGGGAAP DDRGAPCPRK LHARSPLAGS ARAARERVPR RRHDRAGRRR GRGRRRAAGR  180
ARPPRSIVTP AAADRLAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG343900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-