PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG344000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 255aa    MW: 27361 Da    PI: 5.9122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG344000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.2e-1395140454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RRd++N +f eLr  +P+       +++Ka+ L  A  YI +L
  Pavir.6NG344000.1.p  95 SHVEAERQRRDKLNRRFCELRAAVPTV-----SRMDKASLLADAATYIAEL 140
                          799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2591140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-1694159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1095140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.62E-1395145No hitNo description
Gene3DG3DSA:4.10.280.108.6E-1795155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1197146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDELVSSTPP FFSTADHHLL RDLELELLFC NGLDQWMVAD EPLDLDGATW GDDGSGGSAS  60
AGNNDDLSVE PPPPAAPKRR RGRKPRPRAN GPPISHVEAE RQRRDKLNRR FCELRAAVPT  120
VSRMDKASLL ADAATYIAEL RDRVEQLEAE AKQASAATTV AAATTPLLGL GLEEKLEVRV  180
VARDAAALRL TSAARHAPAC LMDALQSLDL PVQHACVTRL GGVTVQDAVV DVPAGLRDER  240
GLHAALLHKL QRSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1993153666Transcription factor MYC2
5gnj_B3e-1993153666Transcription factor MYC2
5gnj_E3e-1993153666Transcription factor MYC2
5gnj_F3e-1993153666Transcription factor MYC2
5gnj_G3e-1993153666Transcription factor MYC2
5gnj_I3e-1993153666Transcription factor MYC2
5gnj_M3e-1993153666Transcription factor MYC2
5gnj_N3e-1993153666Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG344000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974088.11e-108transcription factor bHLH14
TrEMBLA0A2T7DAC81e-111A0A2T7DAC8_9POAL; Uncharacterized protein
STRINGPavir.Fb02191.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-17bHLH family protein