PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG344200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 472aa    MW: 50680.5 Da    PI: 6.9229
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG344200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.59.2e-11324382563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr +r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l +l+  +a l +++
  Pavir.6NG344200.1.p 324 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSAGLATQN 382
                          899*********************************************99998887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-18320384IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.852322385IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-12324375No hitNo description
PfamPF001701.7E-9324382IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.9E-12324381No hitNo description
CDDcd147031.06E-23325376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDDPGAADPG AARHHLSPQL GGQPPVPRSP TPLDLASGYR RLSPSLRPPA HPQPRLPSPY  60
AQIPAPGGGD HHARSLSQPL FFSLDPLPPP PYADLGAAAH AVPPSPASSS SDPQQQQQPP  120
PPPLGLPPRK GAHRRSHSDI PFGGFAPLSP PLPPPAPVKR EVTVAAEGCR LDGGGGDAAL  180
YDLVNAYMDL DGIDPLNSSE DRHDDRDSRA SGTRAGSAAE SSENEAESQS TSIDRKDGGK  240
SRHCRSLSMD SFMGTLNFSA GDESPKLPLP SPGGSLTRSG SGSLEGGAVA LFDMEFANGE  300
FTESEKKKIM ANERLAEIAL TDPKRVKRIL ANRQSAARSK ERKMRYIQEL EHKVQVLQTE  360
ATTLSAQLTM LQRDSAGLAT QNNELKIRLQ AMEQQAQLRD ALNEALTAEV QRLKLATGEI  420
TDGRMPKSLQ QQMNSQMLQL QQLQIQQQQQ QQAPQSQQQG QQQQQQPQKS A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.193530.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG344200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9558090.0EU955809.1 Zea mays clone 1547185 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822599.10.0transcription factor RF2a-like
TrEMBLA0A2T7DAC50.0A0A2T7DAC5_9POAL; Uncharacterized protein
STRINGPavir.Fb02374.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62473650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.38e-68bZIP family protein