PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG344700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 443aa    MW: 45945.4 Da    PI: 9.1281
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG344700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1195.6e-37152255699
                  TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....... 88 
                           r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ +++ +    ++ss+       
  Pavir.6NG344700.1.p 152 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAT-TVDGVLRIPTQSSSsspssla 240
                          6999********************************************************88888444.333333333223221123333 PP

                  TCP  89 ....kaaksaakskk 99 
                              ++++++  +k 
  Pavir.6NG344700.1.p 241 mvdgEESSAKRRRKL 255
                          343322222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-30154245IPR005333Transcription factor, TCP
PROSITE profilePS5136927.381154208IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLRGPVQVST GPHHDPVGRW PRASWSHRQV TPRDKSSSLV SPSRSPDAQA ASQVNRPRRA  60
PPPRSHAERR AITRAIQSLP PLVSIRAMEA QAQDRAEEGE AAARQHAVGA GGAAAAAGVA  120
MGAIPMHGFM VPKPEPVEYF GGMAVVRSKP PPRNRDRHTK VEGRGRRIRM PAACAARIFQ  180
LTRELGHKSD GETIRWLLQQ SEPAIIAATG TGTVPAIATT VDGVLRIPTQ SSSSSPSSLA  240
MVDGEESSAK RRRKLQPTRA AAGASPLATA APAAYYPVIA DPLLQGTGGA AAIAIPSGLA  300
PITAASGTPQ GLVPVFAVPA AGSPGGGANR MIPQATAVWM VPQPGAAAGG APAQPAQFWA  360
IQSAPQLINL GGGQTAVFPT AVNVADFQQQ HASTMSHNSN SEQHPGSGPH EQQRGGRSDV  420
DHPEEDEDDD DEEPVSDSGP EE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG344700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9458660.0EU945866.1 Zea mays clone 288123 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664491.30.0transcription factor PCF2
SwissprotA2YXQ11e-149PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-149PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A2S3I4I00.0A0A2S3I4I0_9POAL; Uncharacterized protein
STRINGPavir.J12088.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-41TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]