PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG346600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 399aa    MW: 41736.2 Da    PI: 6.0912
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG346600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34381292102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++++isw+++g++fvv+ + efa ++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k
  Pavir.6NG346600.1.p  38 FLTKTYQLVDDPAVDDVISWNNDGSAFVVWRPAEFALDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEK 118
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Pavir.6NG346600.1.p 119 RLLCDIHRRKV 129
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3729122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5734127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.44E-3435127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAAEQAAAAT GGEPPPATPQ PAEGVTAAAG QRSVPTPFLT KTYQLVDDPA VDDVISWNND  60
GSAFVVWRPA EFALDLLPKY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN DCFRRGEKRL  120
LCDIHRRKVT PATATGAAVT VAAAAAAAIP MALPVGSPVY SGEEQVLSSS SSPEPPPLQP  180
QAASGSGSGG AASGGDAGEE NDRLRRENAR LARELGQMKK LCNNILLLMS KYAATQQLDA  240
AKAAAAGNCS GESSEAAATL PSVLELLPSC RGGPAPAAAL EPPEAAAGTE REQDDDDKAG  300
ARLFGVSIGR KRARDDTSNG HAGGAAAEVK AEPVDAHPDH HLHQLPQLRD DDHHHGGTEP  360
QAWPIYRPRP VYHPLRACNG SAGSAGTGSD HDVSNSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-262913312125Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.205050.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG346600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650330.0EU965033.1 Zea mays clone 283366 heat shock factor protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149902.10.0heat shock factor protein 7
RefseqXP_025822703.10.0heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-140HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A2T7DAF70.0A0A2T7DAF7_9POAL; Uncharacterized protein
STRINGPavir.Fb02392.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-57HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]