PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG352000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 306aa    MW: 31067.1 Da    PI: 8.0718
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG352000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.11.9e-671032463153
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 
                          +gt+sCqdCGnqakkdCah+RCR CCksrgfdC thvkstWvpaakrrerqqqla+         a++ skr+r+   ++ s++++t++s
  Pavir.6NG352000.1.p 103 AGTISCQDCGNQAKKDCAHMRCRSCCKSRGFDCPTHVKSTWVPAAKRRERQQQLATG--------AAEPSKRPRDA-GAQPSSTTATTTS 183
                          6899*************************************************9997........56789999997.4555555566666 PP

               DUF702  93 saeskke..letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                          s+e++++  +  +++P+evsseavfrcvr++ vd++++e+aYqt+vsi+GhvfkGiL+d G++
  Pavir.6NG352000.1.p 184 SGEQQQQmaMVGERFPREVSSEAVFRCVRLGPVDEADAEVAYQTTVSIAGHVFKGILHDVGPD 246
                          66655551155678***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.0E-62105246IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.9E-27107149IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.6E-23197245IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAGFPLGGGG GGGHHGRGGG GDHHHHPHVS PSSGSDSATA AAAAAAYLYT TAAAAPRGGG  60
FQLWPHHPAQ EHHFYAPNII RFADDPAAGS SRGGRGSASG AGAGTISCQD CGNQAKKDCA  120
HMRCRSCCKS RGFDCPTHVK STWVPAAKRR ERQQQLATGA AEPSKRPRDA GAQPSSTTAT  180
TTSSGEQQQQ MAMVGERFPR EVSSEAVFRC VRLGPVDEAD AEVAYQTTVS IAGHVFKGIL  240
HDVGPDPSVA AAGGFRHAAE GSSPSTAAAG EGSVAGPVSS SAVVMDPYPT PGPYGGAPFF  300
HGHQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG352000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687730.0EU968773.1 Zea mays clone 324045 SHI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821984.11e-159protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A3L6PPK21e-166A0A3L6PPK2_PANMI; Protein SHI RELATED SEQUENCE 1-like
STRINGPavir.Fb02329.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.14e-51Lateral root primordium (LRP) protein-related