PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG352900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 237aa    MW: 25873.8 Da    PI: 6.5294
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG352900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.3e-1063862247
                         T-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                         g W++Ia++++ gRt++++k++w+++
  Pavir.6NG352900.2.p 63 G-WSKIAAKLP-GRTDNEIKNHWNTH 86
                         5.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.3614491IPR017930Myb domain
SuperFamilySSF466891.25E-86296IPR009057Homeodomain-like
PfamPF002491.3E-76386IPR001005SANT/Myb domain
CDDcd001674.27E-76487No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1364104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGPTRSLPRR PVALRASPSW AAGATDGGEG VGRVRAVGRV PLPRPRRVRG SRPSPRRVVS  60
VTGWSKIAAK LPGRTDNEIK NHWNTHIKKK LIKMGIDPAT HQPLANSKAS TSQSTDTAES  120
TKSSDTRDEQ GVKEGSRRDM ALPTDSSEQS SWVESGNDGS GQDQEQLVNW LPETDLPMDE  180
PWLNFMSTNH DALGIVEEPL PWDGATDWLL DYQYFGMCSL NLIDNSTLPS LDGSNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.163950.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG352900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698692e-46AK069869.1 Oryza sativa Japonica Group cDNA clone:J023038A16, full insert sequence.
GenBankAP0047042e-46AP004704.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0544G09.
GenBankAP0062652e-46AP006265.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1112_E06.
GenBankAP0149642e-46AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-46CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820510.11e-108protein ODORANT1-like
RefseqXP_025820511.11e-108protein ODORANT1-like
RefseqXP_025820512.11e-108protein ODORANT1-like
RefseqXP_025820514.11e-108protein ODORANT1-like
RefseqXP_025820515.11e-108protein ODORANT1-like
RefseqXP_025820516.11e-108protein ODORANT1-like
RefseqXP_025820517.11e-108protein ODORANT1-like
RefseqXP_025820518.11e-108protein ODORANT1-like
RefseqXP_025820519.11e-108protein ODORANT1-like
RefseqXP_025820520.11e-108protein ODORANT1-like
RefseqXP_025820521.11e-108protein ODORANT1-like
RefseqXP_025820522.11e-108protein ODORANT1-like
RefseqXP_025820523.11e-108protein ODORANT1-like
TrEMBLA0A2T7DAG81e-107A0A2T7DAG8_9POAL; Uncharacterized protein
STRINGPavir.Fb02321.1.p1e-114(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.13e-22myb domain protein 42