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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.6NG363000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
C2H2 |
| Protein Properties |
Length: 416aa MW: 44091.4 Da PI: 8.9511 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.6NG363000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.2 | 3.6e-07 | 238 | 260 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
Pavir.6NG363000.1.p 238 HYCQVCGKGFKRDANLRMHMRAH 260
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MIGGGTNNNP YFLQNHHHQQ QQLFHHALDG MDGGGGGFME PPAASDSADA HCHALLYNLS 60
LLRDKVQQLQ PLVGLAMEHD RPGGTVAAVS SAGAVIQEII TAASSMMYAF QQLCSHGAQS 120
STTANAAPGV VSNIAAAAAV GHARNGGIAD TACGDHQQAA AVMQQQWQHH HHRGGYGYGN 180
RIDTKTSAVV VAAVVPSSSQ SQSQPSTTTA AAMAAEEAAG TSTIIELDAA ELLAKYTHYC 240
QVCGKGFKRD ANLRMHMRAH GDEYKSSAAL ANPAKGKAGG GGDATAAAAR ASRSYYSCPQ 300
EGCRWNRKHA KFLPLKSVIC AKNHYKRSHC PKMYVCNRCN RKHFSVLSDL RTHEKHCGDH 360
RWVCSCGTSF SRKDKLIGHL SLFAGHQAAV PLDRQAANGK RSLLSSSTST THFGT*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK063290 | 1e-159 | AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence. |
| GenBank | AP004587 | 1e-159 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. |
| GenBank | AP005544 | 1e-159 | AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01. |
| GenBank | AP014964 | 1e-159 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 1e-159 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
